convert_source
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convert_source
convert_source
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B
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C
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D
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E
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F
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G
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H
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I
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J
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M
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N
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P
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R
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S
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U
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W
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Z
A
abs_path() (convert_source.cs_utils.fileio.File method)
add_dataset_description() (in module convert_source.batch_convert)
add_readme() (in module convert_source.batch_convert)
add_to_zeropadded() (in module convert_source.cs_utils.utils)
B
batch_proc() (in module convert_source.batch_convert)
bids_id() (in module convert_source.batch_convert)
bids_ignore() (in module convert_source.batch_convert)
BIDSimg (class in convert_source.cs_utils.utils)
BIDSMetaDataError
BIDSNameError
bvals (convert_source.cs_utils.utils.BIDSimg attribute)
bvecs (convert_source.cs_utils.utils.BIDSimg attribute)
C
calc_read_time() (in module convert_source.cs_utils.utils)
check_dependency() (convert_source.cs_utils.fileio.Command method)
cmd_list (convert_source.cs_utils.fileio.Command attribute)
collect_info() (in module convert_source.cs_utils.utils)
Command (class in convert_source.cs_utils.fileio)
command (convert_source.cs_utils.fileio.Command attribute)
comp_dict() (in module convert_source.cs_utils.utils)
construct_bids_dict() (in module convert_source.cs_utils.bids_info)
construct_bids_name() (in module convert_source.cs_utils.bids_info)
ConversionError
convert_image_data() (in module convert_source.cs_utils.utils)
convert_source
module
convert_source.batch_convert
module
convert_source.cs_utils
module
convert_source.cs_utils.bids_info
module
convert_source.cs_utils.const
module
convert_source.cs_utils.fileio
module
convert_source.cs_utils.img_dir
module
convert_source.cs_utils.utils
module
convert_source.imgio
module
convert_source.imgio.dcmio
module
convert_source.imgio.niio
module
convert_source.imgio.pario
module
copy_img_data() (convert_source.cs_utils.utils.BIDSimg method)
create_participant_tsv() (in module convert_source.batch_convert)
D
data (convert_source.cs_utils.utils.SubDataInfo attribute)
data_to_bids() (in module convert_source.batch_convert)
debug() (convert_source.cs_utils.fileio.LogFile method)
DependencyError
depth() (in module convert_source.cs_utils.utils)
DICOMerror
dict_multi_update() (in module convert_source.cs_utils.utils)
E
error() (convert_source.cs_utils.fileio.LogFile method)
ext (convert_source.cs_utils.fileio.LogFile attribute)
(convert_source.cs_utils.fileio.NiiFile attribute)
F
File (class in convert_source.cs_utils.fileio)
file (convert_source.cs_utils.fileio.File attribute)
,
[1]
(convert_source.cs_utils.fileio.NiiFile attribute)
file_id (convert_source.cs_utils.utils.SubDataInfo attribute)
file_parts() (convert_source.cs_utils.fileio.File method)
G
generate_img_list() (in module convert_source.cs_utils.img_dir)
get_bvals() (in module convert_source.cs_utils.utils)
get_bwpppe() (in module convert_source.imgio.dcmio)
get_data_params() (in module convert_source.imgio.niio)
get_dcm2niix_version() (in module convert_source.batch_convert)
get_dcm_scan_tech() (in module convert_source.cs_utils.utils)
get_echo() (in module convert_source.cs_utils.utils)
get_echo_time() (in module convert_source.imgio.pario)
get_etl() (in module convert_source.imgio.pario)
get_flip_angle() (in module convert_source.imgio.pario)
get_mb() (in module convert_source.imgio.dcmio)
(in module convert_source.imgio.pario)
get_metadata() (in module convert_source.cs_utils.utils)
get_nii_tr() (in module convert_source.imgio.niio)
get_num_frames() (in module convert_source.imgio.niio)
get_par_scan_tech() (in module convert_source.cs_utils.utils)
get_pix_band() (in module convert_source.cs_utils.utils)
get_recon_mat() (in module convert_source.cs_utils.utils)
get_red_fact() (in module convert_source.imgio.dcmio)
(in module convert_source.imgio.pario)
get_scan_time() (in module convert_source.imgio.dcmio)
(in module convert_source.imgio.pario)
get_wfs() (in module convert_source.imgio.pario)
glob_dcm() (in module convert_source.cs_utils.utils)
glob_img() (in module convert_source.cs_utils.utils)
gunzip_file() (in module convert_source.cs_utils.utils)
gzip_file() (in module convert_source.cs_utils.utils)
H
header_search() (in module convert_source.cs_utils.utils)
I
id_img_file() (in module convert_source.cs_utils.img_dir)
img_dir_list() (in module convert_source.cs_utils.img_dir)
img_exclude() (in module convert_source.cs_utils.utils)
imgs (convert_source.cs_utils.utils.BIDSimg attribute)
info() (convert_source.cs_utils.fileio.LogFile method)
is_camel_case() (in module convert_source.cs_utils.bids_info)
is_valid_dcm() (in module convert_source.imgio.dcmio)
J
jsons (convert_source.cs_utils.utils.BIDSimg attribute)
L
list_dict() (in module convert_source.cs_utils.utils)
list_dir_files() (in module convert_source.cs_utils.utils)
list_in_substr() (in module convert_source.cs_utils.utils)
list_to_file() (in module convert_source.cs_utils.img_dir)
log() (convert_source.cs_utils.fileio.LogFile method)
log_file (convert_source.cs_utils.fileio.LogFile attribute)
log_file() (in module convert_source.batch_convert)
LogFile (class in convert_source.cs_utils.fileio)
M
make_bids_name() (in module convert_source.batch_convert)
mk_tmp_dir() (convert_source.cs_utils.fileio.TmpDir method)
module
convert_source
convert_source.batch_convert
convert_source.cs_utils
convert_source.cs_utils.bids_info
convert_source.cs_utils.const
convert_source.cs_utils.fileio
convert_source.cs_utils.img_dir
convert_source.cs_utils.utils
convert_source.imgio
convert_source.imgio.dcmio
convert_source.imgio.niio
convert_source.imgio.pario
N
nifti_to_bids() (in module convert_source.batch_convert)
NiiFile (class in convert_source.cs_utils.fileio)
num_runs() (in module convert_source.cs_utils.bids_info)
P
parent_tmp_dir (convert_source.cs_utils.fileio.TmpDir attribute)
,
[1]
PARfileReadError
R
read_config() (in module convert_source.batch_convert)
read_json() (in module convert_source.cs_utils.utils)
read_unknown_subs() (in module convert_source.batch_convert)
rm_ext() (convert_source.cs_utils.fileio.File method)
rm_tmp_dir() (convert_source.cs_utils.fileio.TmpDir method)
run() (convert_source.cs_utils.fileio.Command method)
S
search_bids() (in module convert_source.cs_utils.bids_info)
ses (convert_source.cs_utils.utils.SubDataInfo attribute)
source_to_bids() (in module convert_source.batch_convert)
sub (convert_source.cs_utils.utils.SubDataInfo attribute)
SubDataInfo (class in convert_source.cs_utils.utils)
SubInfoError
sym_link() (in module convert_source.cs_utils.utils)
T
tmp_dir (convert_source.cs_utils.fileio.TmpDir attribute)
,
[1]
(convert_source.cs_utils.fileio.TmpDir.TmpFile attribute)
,
[1]
tmp_file (convert_source.cs_utils.fileio.TmpDir.TmpFile attribute)
,
[1]
TmpDir (class in convert_source.cs_utils.fileio)
TmpDir.TmpFile (class in convert_source.cs_utils.fileio)
touch() (convert_source.cs_utils.fileio.File method)
U
update_json() (in module convert_source.cs_utils.utils)
W
warning() (convert_source.cs_utils.fileio.LogFile method)
write_json() (in module convert_source.cs_utils.utils)
write_txt() (convert_source.cs_utils.fileio.File method)
write_unknown_to_file() (in module convert_source.batch_convert)
Z
zeropad() (in module convert_source.cs_utils.utils)
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